RT Journal Article SR Electronic T1 Panoptic vDISCO imaging reveals neuronal connectivity, remote trauma effects and meningeal vessels in intact transparent mice JF bioRxiv FD Cold Spring Harbor Laboratory SP 374785 DO 10.1101/374785 A1 Ruiyao Cai A1 Chenchen Pan A1 Alireza Ghasemigharagoz A1 Mihail I. Todorov A1 Benjamin Förstera A1 Shan Zhao A1 Harsharan S. Bhatia A1 Leander Mrowka A1 Delphine Theodorou A1 Markus Rempfler A1 Anna Xavier A1 Benjamin T. Kress A1 Corinne Benakis A1 Arthur Liesz A1 Bjoern Menze A1 Martin Kerschensteiner A1 Maiken Nedergaard A1 Ali Ertürk YR 2018 UL http://biorxiv.org/content/early/2018/07/23/374785.abstract AB Analysis of entire transparent rodent bodies could provide holistic information on biological systems in health and disease. However, it has been challenging to reliably image and quantify signal from endogenously expressed fluorescent proteins in large cleared mouse bodies due to the low signal contrast. Here, we devised a pressure driven, nanobody based whole-body immunolabeling technology to enhance the signal of fluorescent proteins by up to two orders of magnitude. This allowed us to image subcellular details in transparent mouse bodies through bones and highly autofluorescent tissues, and perform quantifications. We visualized for the first-time whole-body neuronal connectivity of an entire adult mouse and discovered that brain trauma induces degeneration of peripheral axons. We also imaged meningeal lymphatic vessels and immune cells through the intact skull and vertebra in naïve animals and trauma models. Thus, our new approach can provide an unbiased holistic view of biological events affecting the nervous system and the rest of the body.Note: Manuscript videos are available at ‘Supplementary material’ section of BioRxiv and at the following link http://vdisco.isd-muc.de/