RT Journal Article
SR Electronic
T1 Brainrender. A python based software for visualisation of neuroanatomical and morphological data
JF bioRxiv
FD Cold Spring Harbor Laboratory
SP 2020.02.23.961748
DO 10.1101/2020.02.23.961748
A1 Federico Claudi
A1 Adam L. Tyson
A1 Tiago Branco
YR 2020
UL http://biorxiv.org/content/early/2020/02/25/2020.02.23.961748.abstract
AB Here we present brainrender, an open source python package for rendering three-dimensional neuroanatomical data aligned to the Allen Mouse Atlas. Brainrender can be used to explore, visualise and compare data from publicly available datasets (e.g. from the Mouse Light project from Janelia) as well as data generated within individual laboratories. Brainrender facilitates the exploration of neuroanatomical data with three-dimensional renderings, aiding the design and interpretation of experiments and the dissemination of anatomical findings. Additionally, brainrender can also be used to generate high-quality, publication-ready, figures for scientific publications.