RT Journal Article SR Electronic T1 Profiling microglia from AD donors and non-demented elderly in acute human post-mortem cortical tissue JF bioRxiv FD Cold Spring Harbor Laboratory SP 2020.03.18.995332 DO 10.1101/2020.03.18.995332 A1 Alsema, Astrid M. A1 Jiang, Qiong A1 Kracht, Laura A1 Gerrits, Emma A1 Dubbelaar, Marissa L. A1 Miedema, Anneke A1 Brouwer, Nieske A1 Woodbury, Maya A1 Wachter, Astrid A1 Xi, Hualin S. A1 Möller, Thomas A1 Biber, Knut P. A1 Kooistra, Susanne M. A1 Boddeke, Erik W.G.M A1 Eggen, Bart J.L. YR 2020 UL http://biorxiv.org/content/early/2020/03/19/2020.03.18.995332.abstract AB Microglia are the tissue-resident macrophages of the central nervous system (CNS). Recent studies based on bulk and single-cell RNA sequencing in mice indicate high relevance of microglia with respect to risk genes and neuro-inflammation in Alzheimer’s disease. Here, we investigated microglia transcriptomes at bulk and single cell level in non-demented elderly and AD donors using acute human post-mortem cortical brain samples. We identified 9 human microglial subpopulations with heterogeneity in gene expression. Notably, gene expression profiles and subcluster composition of microglia did not differ between AD donors and non-demented elderly in bulk RNA sequencing nor in single-cell sequencing.