RT Journal Article SR Electronic T1 Assemblytics: a web analytics tool for the detection of assembly-based variants JF bioRxiv FD Cold Spring Harbor Laboratory SP 044925 DO 10.1101/044925 A1 Maria Nattestad A1 Michael C Schatz YR 2016 UL http://biorxiv.org/content/early/2016/03/20/044925.abstract AB Summary: Assemblytics is a web app for detecting and analyzing structural variants from a de novo genome assembly aligned to a reference genome. It incorporates a unique anchor filtering approach to increase robustness to repetitive elements, and identifies six classes of variants based on their distinct alignment signatures. Assemblytics can be applied both to comparing aberrant genomes, such as human cancers, to a reference, or to identify differences between related species. Multiple interactive visualizations enable in-depth explorations of the genomic distributions of variants.Availability and Implementation: http://qb.cshl.edu/assemblytics, https://github.com/marianattestad/assemblyticsContact: mnattest{at}cshl.eduSupplementary information: Supplementary data are available at Bioinformatics online.