PT  - JOURNAL ARTICLE
AU  - Mirdita, Milot
AU  - Steinegger, Martin
AU  - Söding, Johannes
TI  - MMseqs2 desktop and local web server app for fast, interactive sequence searches
AID  - 10.1101/419895
DP  - 2018 Jan 01
TA  - bioRxiv
PG  - 419895
4099  - http://biorxiv.org/content/early/2018/09/18/419895.short
4100  - http://biorxiv.org/content/early/2018/09/18/419895.full
AB  - The MMseqs2 desktop and web server app facilitates interactive sequence searches through custom protein sequence and profile databases on personal workstations. By eliminating MMseqs2’s runtime overhead, we reduced response times to a few seconds at sensitivities close to BLAST.Availability and implementation The app is easy to install for non-experts. Source code, prebuilt desktop app packages for Windows, macOS and Linux, Docker images for the web server application, and a demo web server are available at https://search.mmseqs.com.Contact martin.steinegger{at}mpibpc.mpg.de or soeding{at}mpibpc.mpg.de