RT Journal Article
SR Electronic
T1 MMseqs2 desktop and local web server app for fast, interactive sequence searches
JF bioRxiv
FD Cold Spring Harbor Laboratory
SP 419895
DO 10.1101/419895
A1 Mirdita, Milot
A1 Steinegger, Martin
A1 Söding, Johannes
YR 2018
UL http://biorxiv.org/content/early/2018/09/18/419895.abstract
AB The MMseqs2 desktop and web server app facilitates interactive sequence searches through custom protein sequence and profile databases on personal workstations. By eliminating MMseqs2’s runtime overhead, we reduced response times to a few seconds at sensitivities close to BLAST.Availability and implementation The app is easy to install for non-experts. Source code, prebuilt desktop app packages for Windows, macOS and Linux, Docker images for the web server application, and a demo web server are available at https://search.mmseqs.com.Contact martin.steinegger{at}mpibpc.mpg.de or soeding{at}mpibpc.mpg.de