RT Journal Article
SR Electronic
T1 Deep learning approach for automated cancer detection and tumor proportion score estimation of PD-L1 expression in lung adenocarcinoma
JF bioRxiv
FD Cold Spring Harbor Laboratory
SP 2020.05.31.126797
DO 10.1101/2020.05.31.126797
A1 J. Wu
A1 C. Liu
A1 X. Liu
A1 W. Sun
A1 L. Li
A1 Y. Zhang
A1 J. Zhang
A1 H. Wang
A1 X. Liu
A1 X. Yang
A1 X. Huang
A1 D. Lin
A1 S. Ling
YR 2020
UL http://biorxiv.org/content/early/2020/06/01/2020.05.31.126797.abstract
AB Background This study proposed a computational method to detect the cancer areas and calculate the tumor proportion score (TPS) of PD-L1 immunohistochemistry (IHC) expression for lung adenocarcinoma based on deep learning and transfer learning.Patients and methods PD-L1 22C3 and SP142 IHC slides of lung adenocarcinoma samples on digitized whole-slide images (WSI) database were employed. We build a deep convolutional neural network (DCNN) to automatically segment cancer regions. TPS was calculated based on segmented areas and then compared with the interpretations of pathologists.Results We trained a DCNN model based on 22C3 dataset and fine-tuned it with SP142 dataset. We obtain a robust performance on cancer region detection on both datasets, with a sensitivity of 93.36% (22C3) and 92.80% (SP142) and a specificity of 93.97% (22C3) and 89.25% (SP142). With all the coefficient of determinations larger than 0.9 and Fleiss’ and Cohen’s Kappa larger than 0.8 (between mean or median of pathologists and TPS calculated by our method), we also found out the strong correlation between the TPS estimated by our computational method and estimation from multiple pathologists’ interpretations of 22C3 and SP142 respectively.Conclusion We provide an AI method to efficiently predict cancer region and calculate TPS in PD-L1 IHC slide of lung adenocarcinoma on two different antibodies. It demonstrates the potential of using deep learning methods to conveniently access PD-L1 IHC status. In the future, we will further validate the AI tool for automated scoring PD-L1 in large volume samples.Competing Interest StatementThe authors have declared no competing interest.