RT Journal Article SR Electronic T1 A Genome-wide Library of MADM Mice for Single-Cell Genetic Mosaic Analysis JF bioRxiv FD Cold Spring Harbor Laboratory SP 2020.06.05.136192 DO 10.1101/2020.06.05.136192 A1 Contreras, Ximena A1 Davaatseren, Amarbayasgalan A1 Amberg, Nicole A1 Hansen, Andi H. A1 Sonntag, Johanna A1 Andersen, Lill A1 Bernthaler, Tina A1 Heger, Anna A1 Johnson, Randy A1 Schwarz, Lindsay A. A1 Luo, Liqun A1 Rülicke, Thomas A1 Hippenmeyer, Simon YR 2020 UL http://biorxiv.org/content/early/2020/06/06/2020.06.05.136192.abstract AB Mosaic Analysis with Double Markers (MADM) offers a unique approach to visualize and concomitantly manipulate genetically-defined cells in mice with single-cell resolution. MADM applications include the analysis of lineage; single-cell morphology and physiology; genomic imprinting phenotypes; and dissection of cell-autonomous gene functions in vivo in health and disease. Yet, MADM could only be applied to <25% of all mouse genes on select chromosomes thus far. To overcome this limitation, we generated transgenic mice with knocked-in MADM cassettes near the centromeres of all 19 autosomes and validated their use across organs. With this resource, >96% of the entire mouse genome can now be subjected to single-cell genetic mosaic analysis. Beyond proof-of-principle, we applied our MADM library to systematically trace sister chromatid segregation in distinct mitotic cell lineages. We found striking chromosome-specific biases in segregation patterns, reflecting a putative mechanism for the asymmetric segregation of genetic determinants in somatic stem cell division.Competing Interest StatementThe authors have declared no competing interest.