PT  - JOURNAL ARTICLE
AU  - Vanessa Chong-Morrison
AU  - Filipa C. Simões
AU  - Upeka Senanayake
AU  - Dervla S. Carroll
AU  - Paul R. Riley
AU  - Tatjana Sauka-Spengler
TI  - Re-purposing Ac/Ds transgenic system for CRISPR/dCas9 modulation of enhancers and non-coding RNAs in zebrafish
AID  - 10.1101/450684
DP  - 2018 Jan 01
TA  - bioRxiv
PG  - 450684
4099  - http://biorxiv.org/content/early/2018/10/23/450684.1.short
4100  - http://biorxiv.org/content/early/2018/10/23/450684.1.full
AB  - Due to its genetic amenability coupled with recent advances in genome editing, the zebrafish serves as an excellent model to examine the function of both coding and non-coding elements. Recently, the non-coding genome has gained prominence due to its critical role in development and disease. Here, we have re-purposed the Ac/Ds maize transposition system to reliably screen and efficiently characterise zebrafish enhancers, with or without germline propagation. We further utilised the system to stably express guide RNAs in microinjected embryos enabling tissue-specific CRISPR/dCas9-interference (CRISPRi) knockdown of lncRNA and enhancer activity without disrupting the underlying genetic sequence. Our study highlights the utility of Ac/Ds transposition for transient epigenome modulation of non-coding elements in zebrafish.Summary statement We adapted the Ac/Ds transposition system, which enables continuous expression of guide RNAs for CRISPR/dCas9 perturbation, to examine the function of non-coding RNAs and enhancer elements in zebrafish.