RT Journal Article SR Electronic T1 High-performance pipeline for MutMap and QTL-seq JF bioRxiv FD Cold Spring Harbor Laboratory SP 2020.06.28.176586 DO 10.1101/2020.06.28.176586 A1 Yu Sugihara A1 Lester Young A1 Hiroki Yaegashi A1 Satoshi Natsume A1 Daniel J. Shea A1 Hiroki Takagi A1 Helen Booker A1 Hideki Innan A1 Ryohei Terauchi A1 Akira Abe YR 2020 UL http://biorxiv.org/content/early/2020/06/29/2020.06.28.176586.abstract AB Bulked segregant analysis implemented in MutMap and QTL-seq is a powerful and efficient method to identify agronomically important loci. However, the previous pipelines were not user-friendly to install and run. Here, we describe new pipelines for MutMap and QTL-seq. These updated pipelines are approximately 5-8 times faster than the previous pipeline, are easier for novice users to use and can be easily installed through bioconda with all dependencies.Competing Interest StatementThe authors have declared no competing interest.