PT  - JOURNAL ARTICLE
AU  - D.M., Emms
AU  - S., Kelly
TI  - OrthoFinder2: fast and accurate phylogenomic orthology analysis from gene sequences
AID  - 10.1101/466201
DP  - 2018 Jan 01
TA  - bioRxiv
PG  - 466201
4099  - http://biorxiv.org/content/early/2018/11/08/466201.short
4100  - http://biorxiv.org/content/early/2018/11/08/466201.full
AB  - Ortholog inference has fundamental importance across the biological sciences, underpinning phylogenetics, comparative genomics and prediction of gene function. We developed OrthoFinder (https://github.com/davidemms/OrthoFinder), which achieves higher ortholog recall than all current methods as assessed by community-standard benchmarks. Uniquely, OrthoFinder also infers orthogroups, genes trees, gene duplication events, the rooted species tree and extensive comparative genomic statistics, thus enabling the next generation of phylogenomic analyses.