RT Journal Article SR Electronic T1 MRE11-RAD50-NBS1 activates Fanconi Anemia R-loop suppression at transcription-replication conflicts JF bioRxiv FD Cold Spring Harbor Laboratory SP 472654 DO 10.1101/472654 A1 Emily Yun-chia Chang A1 James P. Wells A1 Shu-Huei Tsai A1 Yan Coulombe A1 Yujia A. Chan A1 Yi Dan Zhu A1 Louis-Alexandre Fournier A1 Philip Hieter A1 Jean-Yves Masson A1 Peter C. Stirling YR 2018 UL http://biorxiv.org/content/early/2018/11/17/472654.abstract AB Ectopic R-loop accumulation causes DNA replication stress and genome instability. To avoid these outcomes, cells possess a range of anti-R-loop mechanisms, including RNaseH that degrades the RNA moiety in R-loops. To comprehensively identify anti-R-loop mechanisms, we performed a genome-wide trigenic interaction screen in yeast lacking RNH1 and RNH201. We identified >100 genes critical for fitness in the absence of RNaseH, which were enriched for DNA replication fork maintenance factors such as RAD50. We show in yeast and human cells that R-loops accumulate during RAD50 depletion. In human cancer cell models, we find that RAD50 and its partners in the MRE11-RAD50-NBS1 complex regulate R-loop-associated DNA damage and replication stress. We show that a non-nucleolytic function of MRE11 is important for R-loop suppression via activation of PCNA-ubiquitination by RAD18 and recruiting anti-R-loop helicases in the Fanconi Anemia pathway. This work establishes a novel role for MRE11-RAD50-NBS1 in directing tolerance mechanisms of transcription-replication conflicts.