PT  - JOURNAL ARTICLE
AU  - Jacob G. Scott
AU  - Philip K. Maini
AU  - Alexander R. A. Anderson
AU  - Alexander G. Fletcher
TI  - Inferring Tumour Proliferative Organisation from Phylogenetic Tree Measures in a Computational Model
AID  - 10.1101/334946
DP  - 2018 Jan 01
TA  - bioRxiv
PG  - 334946
4099  - http://biorxiv.org/content/early/2018/11/23/334946.short
4100  - http://biorxiv.org/content/early/2018/11/23/334946.full
AB  - We use a computational modelling approach to explore whether it is possible to infer a tumour’s cell proliferative hierarchy, under the assumptions of the cancer stem cell hypothesis and neutral evolution. We focus on inferring the symmetric division probability for cancer stem cells in our model, as this is believed to be a key driving parameter of tumour progression and therapeutic response. Given the advent of multi-region sampling, and the opportunities offered by them to understand tumour evolutionary history, we focus on a suite of statistical measures of the phylogenetic trees resulting from the tumour’s evolution in different regions of parameter space and through time. We find strikingly different patterns in these measures for changing symmetric division probability which hinge on the inclusion of spatial constraints. These results give us a starting point to begin stratifying tumours by this biological parameter and also generate a number of actionable clinical and biological hypotheses including changes during therapy, and through tumour evolution.