RT Journal Article SR Electronic T1 Structural and biochemical mechanisms of NLRP1 inhibition by DPP9 JF bioRxiv FD Cold Spring Harbor Laboratory SP 2020.08.13.250241 DO 10.1101/2020.08.13.250241 A1 Menghang Huang A1 Xiaoxiao Zhang A1 Toh Gee Ann A1 Qin Gong A1 Jia Wang A1 Zhifu Han A1 Bin Wu A1 Franklin Zhong A1 Jijie Chai YR 2020 UL http://biorxiv.org/content/early/2020/08/15/2020.08.13.250241.abstract AB The nucleotide-binding domain (NBD) and leucine-rich repeat (LRR)-containing receptors (NLRs) mediate innate immunity by forming inflammasomes. Activation of the NLR protein NLRP1 requires auto-cleavage within its FIIND domain1–7. In resting cells, the dipeptidyl peptidase DPP9 interacts with NLRP1-FIIND and together with a related enzyme DPP8, suppresses spontaneous NLRP1 activation8,9. The mechanisms of DPP8/9-mediated NLRP1 inhibition, however, remain elusive. Here we provide structural and biochemical evidence demonstrating that rat NLRP1 (rNLRP1) interacts with rDPP9 in a stepwise manner to form a 2:1 complex. An auto-inhibited rNLRP1 molecule first interacts with rDPP9 via its ZU5 domain. This 1:1 rNLRP1-rDPP9 complex then captures the UPA domain of a second rNLRP1 molecule via a UPA-interacting site on DPP9 and dimeric UPA-UPA interactions with the first rNLRP1. The 2:1 rNLRP1-rDPP9 complex prevents NLRP1 UPA-mediated higher order oligomerization and maintains NLRP1 in the auto-inhibited state. Structure-guided biochemical and functional assays show that both NLRP1-binding and its enzymatic activity are required for DPP9 to suppress NLRP1, supporting guard-type activation of the NLR. Together, our data reveal the mechanism of DPP9-mediated inhibition of NLRP1 and shed light on activation of the NLRP1 inflammasome.Competing Interest StatementThe authors have declared no competing interest.