PT - JOURNAL ARTICLE AU - Neta Rahimi AU - Inna Averbukh AU - Shari Carmon AU - Eyal D. Schejter AU - Naama Barkai AU - Ben-Zion Shilo TI - Dynamics of Spaetzle morphogen shuttling in the <em>Drosophila</em> embryo shapes pattern AID - 10.1101/505925 DP - 2018 Jan 01 TA - bioRxiv PG - 505925 4099 - http://biorxiv.org/content/early/2018/12/27/505925.short 4100 - http://biorxiv.org/content/early/2018/12/27/505925.full AB - Establishment of morphogen gradients in the early Drosophila embryo is challenged by a diffusible extracellular milieu, and rapid nuclear divisions that occur at the same time. To understand how a sharp gradient is formed within this dynamic environment, we followed the generation of graded nuclear Dorsal (Dl) protein, the hallmark of pattern formation along the dorso-ventral axis, in live embryos. We show that a sharp gradient is formed through extracellular, diffusion-based morphogen shuttling that progresses through several nuclear divisions. Perturbed shuttling in wntD mutant embryos results in a flat activation peak and aberrant gastrulation. Re-entry of Dl into the nuclei at each cycle refines the signaling output, by guiding graded accumulation of the T48 transcript that drives patterned gastrulation. We conclude that diffusion-based ligand shuttling, coupled with dynamic readout, establishes a refined pattern within the diffusible environment of early embryos.