RT Journal Article SR Electronic T1 Correlative fluorescence microscopy, transmission electron microscopy and secondary ion mass spectrometry (CLEM-SIMS) for cellular imaging JF bioRxiv FD Cold Spring Harbor Laboratory SP 2020.10.05.326074 DO 10.1101/2020.10.05.326074 A1 Felix Lange A1 Paola Agüi-Gonzalez A1 Dietmar Riedel A1 Nhu T.N. Phan A1 Stefan Jakobs A1 Silvio O. Rizzoli YR 2020 UL http://biorxiv.org/content/early/2020/10/05/2020.10.05.326074.abstract AB Electron microscopy (EM) has been employed for decades to analyze cell structure. To also analyze the positions and functions of specific proteins, one typically relies on immuno-EM or on a correlation with fluorescence microscopy, in the form of correlated light and electron microscopy (CLEM). Nevertheless, neither of these procedures is able to also address the isotopic composition of cells. To solve this, a correlation with secondary ion mass spectrometry (SIMS) would be necessary. SIMS has been correlated in the past to EM or to fluorescence microscopy in biological samples, but not to CLEM. We achieved this here, using a protocol based on transmission EM, conventional epifluorescence microscopy and nanoSIMS. The protocol is easily applied, and enables the use of all three technologies at high performance parameters. We suggest that CLEM-SIMS will provide substantial information that is currently beyond the scope of conventional correlative approaches.