RT Journal Article SR Electronic T1 Gene-rich X chromosomes implicate intragenomic conflict in the evolution of bizarre genetic systems JF bioRxiv FD Cold Spring Harbor Laboratory SP 2020.10.04.325340 DO 10.1101/2020.10.04.325340 A1 Noelle Anderson A1 Kamil S. Jaron A1 Christina N. Hodson A1 Matthew B. Couger A1 Jan Ševčík A1 Stacy Pirro A1 Laura Ross A1 Scott William Roy YR 2020 UL http://biorxiv.org/content/early/2020/10/07/2020.10.04.325340.abstract AB Haplodiploidy and paternal genome elimination (HD/PGE) are common in animals, having evolved at least two dozen times. HD/PGE typically evolves from male heterogamety (i.e., systems with X chromosomes), however why X chromosomes are important for the evolution of HD/PGE remains debated. The Haploid Viability Hypothesis argues that X chromosomes promote the evolution of male haploidy by facilitating purging recessive deleterious mutations. The Intragenomic Conflict Hypothesis instead argues that X chromosomes promote the evolution of male haploidy due to conflicts with autosomes over sex ratios and transmission. To test these hypotheses, we studied lineages that combine germline PGE with XX/X0 sex determination (gPGE+X systems). Because the evolution of such systems involves changes in genetic transmission but not increases in male hemizygosity, a high degree of X linkage in these systems is predicted by the Intragenomic Conflict Hypothesis but not the Haploid Viability Hypothesis. Through de novo genome sequence, we compared the genomes of 7 species with gPGE+X systems and 10 related species with typical XX/XY or XX/X0 genetic systems. We find highly increased X-linkage in modern and ancestral genomes of gPGE+X species, with an estimated 30 times more X-linked genes than in non-gPGE+X relatives. These results suggest a general role for intragenomic conflict in the origins of PGE/HD. These findings are among the first empirical results supporting a role for intragenomic conflict in the evolution of novel genetic systems.Competing Interest StatementThe authors have declared no competing interest.