RT Journal Article SR Electronic T1 Freeze-frame imaging of synaptic activity using SynTagMA JF bioRxiv FD Cold Spring Harbor Laboratory SP 538041 DO 10.1101/538041 A1 Alberto Perez-Alvarez A1 Brenna C. Fearey A1 Christian Schulze A1 Ryan J. O’Toole A1 Benjamien Moeyaert A1 Manuel A. Mohr A1 Ignacio Arganda-Carreras A1 Wei Yang A1 J. Simon Wiegert A1 Eric R. Schreiter A1 Christine E. Gee A1 Michael B. Hoppa A1 Thomas G. Oertner YR 2019 UL http://biorxiv.org/content/early/2019/02/01/538041.abstract AB Information within the brain travels from neuron to neuron across synapses. At any given moment, only a few synapses within billions will be active and are thought to transmit key information about the environment, a behavior being executed or memory being recalled. Here we present SynTagMA, which marks active synapses within a ~2 s time window. Upon violet illumination, the genetically expressed tag converts from green to red fluorescence if bound to calcium. Targeted to presynaptic terminals, preSynTagMA allows discrimination between active and silent axons. Targeted to excitatory postsynapses, postSynTagMA creates a snapshot of synapses active just before photoconversion. To analyze large datasets, we developed an analysis program that automatically identifies and tracks the fluorescence of thousands of individual synapses in tissue. Together, these tools provide a high throughput method for repeatedly mapping active synapses in vitro and in vivo.