TY - JOUR T1 - Genetic landscape of recessive diseases in the Vietnamese population from large-scale clinical exome sequencing JF - bioRxiv DO - 10.1101/2020.10.27.358358 SP - 2020.10.27.358358 AU - Ngoc Hieu Tran AU - Thanh-Huong Nguyen Thi AU - Hung-Sang Tang AU - Le-Phuc Hoang AU - Trung-Hieu Le Nguyen AU - Nhat-Thang Tran AU - Thu-Huong Nhat Trinh AU - Van Thong Nguyen AU - Bao-Han Huu Nguyen AU - Hieu Trong Nguyen AU - Loc Phuoc Doan AU - Ngoc-Minh Phan AU - Kim-Huong Thi Nguyen AU - Hong-Dang Luu Nguyen AU - Minh-Tam Thi Quach AU - Thanh-Phuong Thi Nguyen AU - Vu Uyen Tran AU - Dinh-Vinh Tran AU - Quynh-Tho Thi Nguyen AU - Thanh-Thuy Thi Do AU - Nien Vinh Lam AU - Phuong Cao Thi Ngoc AU - Dinh Kiet Truong AU - Hoai-Nghia Nguyen AU - Minh-Duy Phan AU - Hoa Giang Y1 - 2020/01/01 UR - http://biorxiv.org/content/early/2020/10/28/2020.10.27.358358.abstract N2 - Purpose Accurate profiling of population-specific recessive diseases is essential for the design of cost-effective carrier screening programs. However, minority populations and ethnic groups, including Vietnamese, are still under-represented in existing genetic studies. Here we reported the first comprehensive study of recessive diseases in the Vietnamese population.Methods Clinical exome sequencing (CES) data of 4,503 disease-associated genes obtained from a cohort of 985 Vietnamese individuals was analyzed to identify pathogenic variants, associated diseases and their carrier frequencies in the population.Results Eighty-five recessive diseases were identified in the Vietnamese population, among which seventeen diseases had carrier frequencies of at least 1% (1 in 100 individuals). Three diseases were especially prevalent in the Vietnamese population with carrier frequencies of 2-12 times higher than in other East Asia or the world populations, including Beta-thalassemia (1 in 25), citrin deficiency (1 in 33) and phenylketonuria (1 in 40). Seven novel pathogenic and three likely pathogenic variants associated with nine recessive diseases were also discovered.Conclusions The comprehensive profile of recessive diseases identified in this study shall enable the design of cost-effective carrier screening programs specific to the Vietnamese population. The newly discovered pathogenic variants may also exist in other populations at extremely low frequencies, thus representing a valuable resource for future research. Our study has demonstrated the advantage of population-specific genetic studies to advance the knowledge and practice of medical genetics.Competing Interest StatementThis study was funded by Gene Solutions, Vietnam. The funder did not have any additional role in the study design, data collection and analysis, decision to publish, or preparation of the manuscript. NHT, HST, HTN, LPD, NMP, KHTN, HDLN, MTTQ, TPTN, VUT, PTCN, HG and MDP are current employees of Gene Solutions, Vietnam. The other authors declare no competing interests. ER -