RT Journal Article
SR Electronic
T1 Mechanism of SARS-CoV-2 polymerase inhibition by remdesivir
JF bioRxiv
FD Cold Spring Harbor Laboratory
SP 2020.10.28.358481
DO 10.1101/2020.10.28.358481
A1 Goran Kokic
A1 Hauke S. Hillen
A1 Dimitry Tegunov
A1 Christian Dienemann
A1 Florian Seitz
A1 Jana Schmitzova
A1 Lucas Farnung
A1 Aaron Siewert
A1 Claudia Höbartner
A1 Patrick Cramer
YR 2020
UL http://biorxiv.org/content/early/2020/10/28/2020.10.28.358481.abstract
AB Remdesivir is the only FDA-approved drug for the treatment of COVID-19 patients1–4. The active form of remdesivir acts as a nucleoside analogue and inhibits the RNA-dependent RNA polymerase (RdRp) of coronaviruses including SARS-CoV-25–7. Remdesivir is incorporated by the RdRp into the growing RNA product and allows for addition of three more nucleotides before RNA synthesis stalls6,8. Here we use synthetic RNA chemistry, biochemistry and cryo-electron microscopy to establish the molecular mechanism of remdesivir-induced RdRp stalling. We show that addition of the fourth nucleotide following remdesivir incorporation into the RNA product is impaired by a barrier to further RNA translocation. This translocation barrier causes retention of the RNA 3’-nucleotide in the substrate-binding site of the RdRp and interferes with entry of the next nucleoside triphosphate, thereby stalling RdRp. In the structure of the remdesivir-stalled state, the 3’-nucleotide of the RNA product is matched with the template base, and this may prevent proofreading by the viral 3’-exonuclease that recognizes mismatches9,10. These mechanistic insights should facilitate the quest for improved antivirals that target coronavirus replication.Competing Interest StatementThe authors have declared no competing interest.