RT Journal Article SR Electronic T1 Mitochondrial biogenesis is transcriptionally repressed in lysosomal lipid storage diseases JF bioRxiv FD Cold Spring Harbor Laboratory SP 381376 DO 10.1101/381376 A1 King Faisal Yambire A1 Lorena Fernandez-Mosquera A1 Robert Steinfeld A1 Christiane Muehle A1 Elina Ikonen A1 Ira Milosevic A1 Nuno Raimundo YR 2019 UL http://biorxiv.org/content/early/2019/02/06/381376.abstract AB Perturbations in mitochondrial function and homeostasis are pervasive in lysosomal storage diseases, but the underlying mechanisms remain unknown. Here, we report a transcriptional program that represses mitochondrial biogenesis and function in lysosomal storage diseases Niemann-Pick type C (NPC) and acid sphingomyelinase deficiency (ASM), in patient cells and mouse tissues. This mechanism is mediated by the transcription factors KLF2 and ETV1, which are both induced in NPC and ASM patient cells. Mitochondrial biogenesis and function defects in these cells are rescued by the silencing of KLF2 or ETV1. Increased ETV1 expression is regulated by KLF2, while the increase of KLF2 protein levels in NPC and ASM stems from impaired signaling downstream sphingosine-1-phosphate receptor 1 (S1PR1), which normally represses KLF2. In patient cells, S1PR1 is undetectable at the plasma membrane and thus unable to repress KLF2. This manuscript provides a mechanistic pathway for the prevalent mitochondrial defects in lysosomal storage diseases.