RT Journal Article SR Electronic T1 The strength of the innate immune response drives the within-host competition between highly and low pathogenic avian influenza viruses JF bioRxiv FD Cold Spring Harbor Laboratory SP 2021.04.06.438580 DO 10.1101/2021.04.06.438580 A1 Pierre Bessière A1 Thomas Figueroa A1 Amelia Coggon A1 Charlotte Foret-Lucas A1 Alexandre Houffschmitt A1 Maxime Fusade-Boyer A1 Gabriel Dupré A1 Maxence Delverdier A1 Romain Volmer YR 2021 UL http://biorxiv.org/content/early/2021/04/06/2021.04.06.438580.abstract AB Highly pathogenic avian influenza viruses (HPAIV) emerge from low pathogenic avian influenza viruses (LPAIV) through the introduction of basic amino acids at the hemagglutinin (HA) cleavage site. Following viral evolution, the newly formed HPAIV likely represents a minority variant within the index host, predominantly infected with the LPAIV precursor. Using reverse-genetics engineered H5N8 viruses differing solely at the HA cleavage, we tested the hypothesis that the interaction between the minority HPAIV and the majority LPAIV could modulate the risk of HPAIV emergence and that the nature of the interaction could depend on the host species. In chickens, we observed that the H5N8LP increased H5N8HP replication and pathogenesis. By contrast, the H5N8LP antagonized H5N8HP replication and pathogenesis in ducks. Ducks mounted a more potent antiviral innate immune response than chickens against the H5N8LP, which correlated with H5N8HP inhibition. Our results provide evidence that HPAIV may be more likely to emerge in chickens than in ducks because of differences in the host response to HPAIV and LPAIV co-infections.