RT Journal Article SR Electronic T1 Digital 3D Brain MRI Arterial Territories Atlas JF bioRxiv FD Cold Spring Harbor Laboratory SP 2021.05.03.442478 DO 10.1101/2021.05.03.442478 A1 Chin-Fu Liu A1 Johnny Hsu A1 Xin Xu A1 Nicholas G Kim A1 Shannon M. Sheppard A1 Erin L. Meier A1 Michael Miller A1 Argye E. Hillis A1 Andreia V. Faria YR 2021 UL http://biorxiv.org/content/early/2021/05/04/2021.05.03.442478.abstract AB The locus and extent of brain damage in the event of vascular insult can be quantitatively established quickly and easily with vascular atlases. Although highly anticipated by clinicians and clinical researchers, no digital MRI arterial atlas is readily available for automated data analyses. We created a digital arterial territory atlas based on lesion distributions in 1,298 patients with acute stroke. The lesions were manually traced in the diffusion-weighted MRIs, binary stroke masks were mapped to a common space, probability maps of lesions were generated and the boundaries for each arterial territory was defined based on the ratio between probabilistic maps. The atlas contains the definition of four major supra- and infra-tentorial arterial territories: Anterior, Middle, Posterior Cerebral Arteries and Vertebro-Basilar, and sub-territories (thalamoperforating, lenticulostriate, basilar and cerebellar arterial territories), in two hierarchical levels. This study provides the first publicly-available, digital, 3D deformable atlas of arterial brain territories, which may serve as a valuable resource for large-scale, reproducible processing and analysis of brain MRIs of patients with stroke and other conditions.Competing Interest StatementMichael I. Miller owns AnatomyWorks. This arrangement is being managed by the Johns Hopkins University in accordance with its conflict-of-interest policies