RT Journal Article SR Electronic T1 Single cell transcriptomics and developmental trajectories of murine cranial neural crest cell fate determination and cell cycle progression JF bioRxiv FD Cold Spring Harbor Laboratory SP 2021.05.10.443503 DO 10.1101/2021.05.10.443503 A1 Yu Ji A1 Shuwen Zhang A1 Kurt Reynolds A1 Ran Gu A1 Moira McMahon A1 Mohammad Islam A1 Yue Liu A1 Taylor Imai A1 Rebecca Donham A1 Huan Zhao A1 Ying Xu A1 Diana Burkart-Waco A1 Chengji J. Zhou YR 2021 UL http://biorxiv.org/content/early/2021/05/10/2021.05.10.443503.abstract AB Cranial neural crest (NC) cells migrate long distances to populate the future craniofacial regions and give rise to various tissues, including facial cartilage, bones, connective tissues, and cranial nerves. However, the mechanism that drives the fate determination of cranial NC cells remains unclear. Using single-cell RNA sequencing combined genetic fate mapping, we reconstructed developmental trajectories of cranial NC cells, and traced their differentiation in mouse embryos. We identified four major cranial NC cell lineages at different status: pre-epithelial-mesenchymal transition, early migration, NC-derived mesenchymal cells, and neural lineage cells from embryonic days 9.5 to 12.5. During migration, the first cell fate determination separates cranial sensory ganglia, the second generates mesenchymal progenitors, and the third separates other neural lineage cells. We then focused on the early facial prominences that appear to be built by undifferentiated, fast-dividing NC cells that possess similar transcriptomic landscapes, which could be the drive for the facial developmental robustness. The post-migratory cranial NC cells exit the cell cycle around embryonic day 11.5 after facial shaping is completed and initiates further fate determination and differentiation processes. Our results demonstrate the transcriptomic landscapes during dynamic cell fate determination and cell cycle progression of cranial NC lineage cells and also suggest that the transcriptomic regulation of the balance between proliferation and differentiation of the post-migratory cranial NC cells can be a key for building up unique facial structures in vertebrates.Competing Interest StatementThe authors have declared no competing interest.