RT Journal Article SR Electronic T1 An anti-inflammatory activation sequence governs macrophage transcriptional dynamics during tissue injury JF bioRxiv FD Cold Spring Harbor Laboratory SP 2021.09.28.462132 DO 10.1101/2021.09.28.462132 A1 Nicolas Denans A1 Nhung T. T. Tran A1 Madeleine E. Swall A1 Daniel C. Diaz A1 Jillian Blanck A1 Tatjana Piotrowski YR 2021 UL http://biorxiv.org/content/early/2021/09/30/2021.09.28.462132.abstract AB Macrophages are essential for tissue repair and regeneration. Yet, the molecular programs, as well as the timing of their activation during and after tissue injury are poorly defined. Using a high spatio-temporal resolution single cell analysis of macrophages coupled with live imaging after sensory hair cell death in zebrafish, we find that the same population of macrophages transitions through a sequence of three major anti-inflammatory activation states. Macrophages first show a signature of glucocorticoid activation, then IL10 signaling and finally the induction of oxidative phosphorylation by IL4/Polyamine signaling. Importantly, loss-of-function of glucocorticoid and IL10 signaling shows that each step of the sequence is independently activated. Our results provide the first evidence that macrophages, in addition to a switch from M1 to M2, sequentially and independently transition though three anti-inflammatory pathways in vivo during tissue injury in a regenerating organ.One-Sentence Summary We show that macrophages are sequentially activated by three different anti-inflammatory pathways during tissue injury.Competing Interest StatementThe authors have declared no competing interest.