PT  - JOURNAL ARTICLE
AU  - Vishal Gupta
AU  - Jesús Irimia
AU  - Iván Pau
AU  - Alfonso Rodríguez-Patón
TI  - BioBlocks: Programming protocols in biology made easier
AID  - 10.1101/081075
DP  - 2016 Jan 01
TA  - bioRxiv
PG  - 081075
4099  - http://biorxiv.org/content/early/2016/10/14/081075.short
4100  - http://biorxiv.org/content/early/2016/10/14/081075.full
AB  - The methods to execute biological experiments are evolving. Affordable fluid handling robots and on-demand biology enterprises are making automating entire experiments a reality. Automation offers the benefit of high-throughput experimentation, rapid prototyping and improved reproducibility of results. However, learning to automate and codify experiments is a difficult task as it requires programming expertise. Here, we present a web-based visual development environment called BioBlocks for describing experimental protocols in biology. It is based on Google’s Blockly and Scratch, and requires little or no experience in computer programming to automate the execution of experiments. The experiments can be specified, saved, modified and shared between multiple users in an easy manner. BioBlocks is open-source and can be customized to execute protocols on local robotic platforms or remotely i.e. in the cloud. It aims to serve as a ‘de facto’ open standard for programming protocols in Biology.