PT  - JOURNAL ARTICLE
AU  - Fu, Xiaoming
AU  - Zhou, Xinyi
AU  - Gu, Dongyang
AU  - Cao, Zhixing
AU  - Grima, Ramon
TI  - DelaySSAToolkit.jl: stochastic simulation of reaction systems with time delays in Julia
AID  - 10.1101/2022.01.21.477236
DP  - 2022 Jan 01
TA  - bioRxiv
PG  - 2022.01.21.477236
4099  - http://biorxiv.org/content/early/2022/01/23/2022.01.21.477236.short
4100  - http://biorxiv.org/content/early/2022/01/23/2022.01.21.477236.full
AB  - Summary DelaySSAToolkit.jl is a Julia package for modelling reaction systems with non-Markovian dynamics, specifically those with time delays. These delays implicitly capture multiple intermediate reaction steps and hence serve as an effective model reduction technique for complex systems in biology, chemistry, ecology and genetics. The package implements a variety of exact formulations of the delay stochastic simulation algorithm.Contact xmfu{at}ecust.edu.cn, zcao{at}ecust.edu.cn, or ramon.grima{at}ed.ac.ukAvailability and Implementation The source code and documentation of DelaySSAToolkit.jl are available at https://github.com/palmtree2013/DelaySSAToolkit.jl.Competing Interest StatementThe authors have declared no competing interest.