RT Journal Article SR Electronic T1 Annelid functional genomics reveal the origins of bilaterian life cycles JF bioRxiv FD Cold Spring Harbor Laboratory SP 2022.02.05.479245 DO 10.1101/2022.02.05.479245 A1 Yan Liang A1 Francisco M. Martín-Zamora A1 Kero Guynes A1 Allan M. Carrillo-Baltodano A1 Yongkai Tan A1 Giacomo Moggioli A1 Océane Seudre A1 Martin Tran A1 Kate Mortimer A1 Nicholas M. Luscombe A1 Andreas Hejnol A1 Ferdinand Marlétaz A1 José M. Martín-Durán YR 2022 UL http://biorxiv.org/content/early/2022/02/06/2022.02.05.479245.abstract AB Indirect development with an intermediate larva exists in all major animal lineages1, and thus larvae are central to most scenarios for animal evolution2–12. Yet how larvae evolved remains disputed. Here we show that changes in the timing of trunk formation underpin the diversification of larvae and bilaterian life cycles. Combining chromosome-scale genome sequencing with transcriptomic and epigenomic profiling in the slow-evolving oweniid Owenia fusiformis13, we found that different genes and genomic regulatory elements control the development of its feeding larva and adult stage. First, O. fusiformis embryos develop into an enlarged anterior domain that forms larval tissues and the adult head, as posterior growth and trunk patterning is deferred to pre-metamorphic stages. These traits also occur in the so-called “head larvae” of other bilaterians14,15, with whom O. fusiformis larva shows extensive transcriptomic similarities. Conversely, animals with non-feeding larvae and gradual metamorphoses, such as the annelid Capitella teleta, start trunk differentiation during embryogenesis, like direct developers. Together, our findings suggest that the ancestral temporal decoupling of head and trunk formation, as retained in extant “head larvae”, allowed larval evolution in Bilateria, questioning prevailing scenarios that propose either co-option10,11 or innovation12 of gene regulatory programmes to explain larva and adult origins.Competing Interest StatementThe authors have declared no competing interest.