RT Journal Article
SR Electronic
T1 SEQUIN: rapid and reproducible analysis of RNA-seq data in R/Shiny
JF bioRxiv
FD Cold Spring Harbor Laboratory
SP 2022.02.23.481646
DO 10.1101/2022.02.23.481646
A1 Claire Weber
A1 Marissa B. Hirst
A1 Ben Ernest
A1 Hannah Baskir
A1 Carlos A. Tristan
A1 Pei-Hsuan Chu
A1 Ilyas Singeç
YR 2022
UL http://biorxiv.org/content/early/2022/02/24/2022.02.23.481646.abstract
AB SEQUIN is a new web application (app) that allows fast and intuitive RNA-sequencing data analysis for organisms, tissues, and single cells. Integrated app functions enable uploading datasets, quality control, gene set enrichment, data visualization, and differential gene expression analysis. We also present the iPSC Profiler, a practical tool that helps to measure pluripotency and cell differentiation. Freely available to the public, SEQUIN empowers scientists to investigate transcriptome data firsthand with cutting edge statistical methods.Competing Interest StatementThe authors have declared no competing interest.