PT  - JOURNAL ARTICLE
AU  - Ljubica Mihaljević
AU  - Zheng Ruan
AU  - James Osei-Owusu
AU  - Wei Lü
AU  - Zhaozhu Qiu
TI  - Inhibition of the proton-activated chloride channel PAC by PIP<sub>2</sub>
AID  - 10.1101/2022.10.06.511171
DP  - 2022 Jan 01
TA  - bioRxiv
PG  - 2022.10.06.511171
4099  - http://biorxiv.org/content/early/2022/10/07/2022.10.06.511171.short
4100  - http://biorxiv.org/content/early/2022/10/07/2022.10.06.511171.full
AB  - Proton-Activated Chloride (PAC) channel is a ubiquitously expressed pH-sensing ion channel that regulates endosomal acidification and macropinosome shrinkage by releasing chloride from the organelle lumens. It is also found at the cell surface, where it is activated under pathological conditions related to acidosis and contributes to acid-induced cell death. However, the pharmacology of the PAC channel is poorly understood. Here, we report that phosphatidylinositol (4,5)-bisphosphate (PIP2) potently inhibits PAC channel activity. We solved the cryo-electron microscopy structure of PAC with PIP2 at pH 4.0 and identified its binding site, which, surprisingly, locates on the extracellular side of the transmembrane domain (TMD). While the overall conformation resembles the previously resolved PAC structure in the desensitized state, the TMD undergoes remodeling upon PIP2-binding. Structural and electrophysiological analyses suggest that PIP2 inhibits the PAC channel by stabilizing the channel in a desensitized-like conformation. To our knowledge, PAC is the first chloride channel reported to be inhibited by PIP2. Our findings identify PIP2 as a new pharmacological tool for the PAC channel and lay the foundation for future drug discovery targeting this channel.Competing Interest StatementThe authors have declared no competing interest.