RT Journal Article SR Electronic T1 Pump-Rest-Leak-Repeat: regulation of the mammalian-brain V-ATPase via ultra-slow mode-switching JF bioRxiv FD Cold Spring Harbor Laboratory SP 2022.10.06.511076 DO 10.1101/2022.10.06.511076 A1 Eleftherios Kosmidis A1 Christopher G. Shuttle A1 Julia Preobraschenski A1 Marcelo Ganzella A1 Peter J. Johnson A1 Salome Veshaguri A1 Mads P. Møller A1 Orestis Marantos A1 Jesper L. Pedersen A1 Reinhard Jahn A1 Dimitrios Stamou YR 2022 UL http://biorxiv.org/content/early/2022/10/07/2022.10.06.511076.abstract AB Vacuolar-type adenosine triphosphatases (V-ATPases)1–3 are electrogenic rotary mechanoenzymes structurally related to F-type ATP synthases4,5. They hydrolyze ATP to establish electrochemical proton gradients for a plethora of cellular processes1,3. In neurons, the loading of all neurotransmitters into synaptic vesicles is energized by ~1 V-ATPase molecule per synaptic vesicle6,7. To shed light into this bona fide single-molecule biological process, we investigated electrogenic proton pumping by single mammalian-brain V-ATPases, using individual synaptic vesicles fused with immobilized liposomes. We show V-ATPases do not pump continuously in time, as hypothesized by observing the rotation of bacterial homologs8 and assuming strict ATP/proton coupling. Instead, they stochastically switch between three novel ultra-long-lived proton-pumping, inactive, and proton-leaky modes. Upending conventional wisdom, direct observation of pumping revealed that physiologically relevant concentrations of ATP do not regulate the intrinsic pumping rate. Instead, ATP regulates V-ATPase activity via the switching probability of the proton-pumping mode. In contrast, electrochemical proton gradients regulate the pumping rate and the switching of the pumping and inactive modes. This work reveals and emphasises the mechanistic and biological importance of mode-switching in protein regulation.Competing Interest StatementThe authors have declared no competing interest.