RT Journal Article SR Electronic T1 Exploring the association between Body Mass Index, Sex and Gene Expression in human colorectal epithelium JF bioRxiv FD Cold Spring Harbor Laboratory SP 2022.11.21.515057 DO 10.1101/2022.11.21.515057 A1 L. Lemler A1 K. Donnelly A1 I. P. M. Tomlinson A1 M. Timofeeva A1 E. Theodoratou A1 C. Fernández Rozadilla A1 J. Fernandez-Tajes A1 Graeme Grimes A1 Susan M. Farrington A1 M. G. Dunlop YR 2022 UL http://biorxiv.org/content/early/2022/12/08/2022.11.21.515057.abstract AB Introduction Colorectal cancer (CRC) is the second most common cause of cancer death globally. Genome-wide association studies have established that cancer risk mediated through common genetic variants can be linked to variation in gene expression. Since obesity and male sex impart substantially elevated CRC risk, we studied transcriptional profiles of normal colorectal mucosa using RNA sequencing to better understand the relationship of these risk factors with gene expression levels.Methods Normal colorectal mucosa was sampled from 365 participants (208 males, 157 females) either during surgery (n=103) or through endoscopic biopsy (n=262) from cancer patients and patients with other unrelated conditions. In total, 238 samples were used for our discovery dataset and 380 samples were obtained for the validation of our findings. The transcription analysis was done using paired-end total RNA sequencing. Data processing and gene filtering followed the Genotype-Tissue Expression (GTEx) Project pipeline v8. Differential Expression Analysis (DEA) was performed on normalised counts to evaluate effects of sex and body mass index on the total gene expression, as well as possible confounding effects of cancer presence on the gene expression in normal colorectal tissue.Results Following filtering, there were 15,465 genes available for analysis. DEA identified two genes that were significantly associated with sex and five associated with body mass index. However, whilst these nominal signals are of interest, none of the genes associated with sex remained significant in a replication dataset. Due to the missing BMI information, replication of DEA by BMI was not possible.Conclusion We found no systematic differences in gene expression in normal colorectal epithelium between males and females, nor did we find a strong association between gene expression and BMI. Although sample size may limit our analysis, the results suggest no or limited confounding effects of BMI and sex on gene expression in normal colorectal mucosa samples.Competing Interest StatementThe authors have declared no competing interest.