PT  - JOURNAL ARTICLE
AU  - Marta Lucchetta
AU  - Markus List
AU  - David B. Blumenthal
AU  - Martin H. Schaefer
TI  - Emergence of power-law distributions in protein-protein interaction networks through study bias
AID  - 10.1101/2023.03.17.533165
DP  - 2023 Jan 01
TA  - bioRxiv
PG  - 2023.03.17.533165
4099  - http://biorxiv.org/content/early/2023/03/21/2023.03.17.533165.short
4100  - http://biorxiv.org/content/early/2023/03/21/2023.03.17.533165.full
AB  - Protein-protein interaction (PPI) networks have been found to be power-law-distributed, i. e., in observed PPI networks, the fraction of nodes with degree k often follows a power-law (PL) distribution k-α. The emergence of this property is typically explained by evolutionary or functional considerations. However, the experimental procedures used to detect PPIs are known to be heavily affected by technical and study bias. For instance, proteins known to be involved in cancer are often heavily overstudied and proteins used as baits in large-scale experiments tend to have many false-positive interaction partners. This raises the question whether PL distributions in observed PPI networks could be explained by these biases alone. Here, we address this question using statistical analyses of the degree distributions of 1000s of observed PPI networks of controlled provenance as well as simulation studies. Our results indicate that study bias and technical bias can indeed largely explain the fact that observed PPI networks tend to be PL-distributed. This implies that it is problematic to derive hypotheses about the degree distribution and emergence of the true biological interactome from the PL distributions in observed PPI networks.Competing Interest StatementThe authors have declared no competing interest.