PT - JOURNAL ARTICLE AU - Reid, Adam J. AU - Talman, Arthur M. AU - Bennett, Hayley M. AU - Gomes, Ana R. AU - Sanders, Mandy J. AU - Illingworth, Christopher J. R. AU - Billker, Oliver AU - Berriman, Matthew AU - Lawniczak, Mara K. N. TI - Single-cell transcriptomics of malaria parasites AID - 10.1101/105015 DP - 2017 Jan 01 TA - bioRxiv PG - 105015 4099 - http://biorxiv.org/content/early/2017/02/10/105015.short 4100 - http://biorxiv.org/content/early/2017/02/10/105015.full AB - Single-cell RNA-sequencing is revolutionising our understanding of seemingly homogeneous cell populations, but has not yet been applied to single cell organisms. Here, we established a method to successfully investigate transcriptional variation across individual malaria parasites. We discover an unexpected, discontinuous program of transcription during asexual growth previously masked by bulk analyses, and uncover novel variation among sexual stage parasites in their expression of gene families important in host-parasite interactions.