PT - JOURNAL ARTICLE AU - Ahanonu, Biafra AU - Crowther, Andrew AU - Kania, Artur AU - Casillas, Mariela Rosa AU - Basbaum, Allan TI - Long-term optical imaging of the spinal cord in awake, behaving animals AID - 10.1101/2023.05.22.541477 DP - 2023 Jan 01 TA - bioRxiv PG - 2023.05.22.541477 4099 - http://biorxiv.org/content/early/2023/05/24/2023.05.22.541477.short 4100 - http://biorxiv.org/content/early/2023/05/24/2023.05.22.541477.full AB - Advances in optical imaging approaches and fluorescent biosensors have enabled an understanding of the spatiotemporal and long-term neural dynamics in the brain of awake animals. However, methodological difficulties and the persistence of post-laminectomy fibrosis have greatly limited similar advances in the spinal cord. To overcome these technical obstacles, we combined in vivo application of fluoropolymer membranes that inhibit fibrosis; a redesigned, cost-effective implantable spinal imaging chamber; and improved motion correction methods that together permit imaging of the spinal cord in awake, behaving mice, for months to over a year. We also demonstrate a robust ability to monitor axons, identify a spinal cord somatotopic map, conduct Ca2+ imaging of neural dynamics in behaving animals responding to pain-provoking stimuli, and observe persistent microglial changes after nerve injury. The ability to couple neural activity and behavior at the spinal cord level will drive insights not previously possible at a key location for somatosensory transmission to the brain.Competing Interest StatementThe authors have declared no competing interest.