RT Journal Article SR Electronic T1 Parallel ancient genomic transects reveal complex population history of early European farmers JF bioRxiv FD Cold Spring Harbor Laboratory SP 114488 DO 10.1101/114488 A1 Mark Lipson A1 Anna Szécsényi-Nagy A1 Swapan Mallick A1 Annamária Pósa A1 Balázs Stégmár A1 Victoria Keerl A1 Nadin Rohland A1 Kristin Stewardson A1 Matthew Ferry A1 Megan Michel A1 Jonas Oppenheimer A1 Nasreen Broomandkhoshbacht A1 Eadaoin Harney A1 Susanne Nordenfelt A1 Bastien Llamas A1 Balázs Gusztáv Mende A1 Kitti Köhler A1 Krisztián Oross A1 Mária Bondár A1 Tibor Marton A1 Anett Osztás A1 János Jakucs A1 Tibor Paluch A1 Ferenc Horváth A1 Piroska Csengeri A1 Judit Koós A1 Katalin Sebők A1 Alexandra Anders A1 Pál Raczky A1 Judit Regenye A1 Judit P. Barna A1 Szilvia Fábián A1 Gábor Serlegi A1 Zoltán Toldi A1 Emese Gyöngyvér Nagy A1 János Dani A1 Erika Molnár A1 György Pálfi A1 Lászlò Márk A1 Béla Melegh A1 Zsolt Bánfai A1 Javier Fernández-Eraso A1 José Antonio Mujika-Alustiza A1 Carmen Alonso Fernández A1 Javier Jiménez Echevarría A1 Ruth Bollongino A1 Jörg Orschiedt A1 Kerstin Schierhold A1 Harald Meller A1 Alan Cooper A1 Joachim Burger A1 Eszter Bánffy A1 Kurt W. Alt A1 Carles Lalueza-Fox A1 Wolfgang Haak A1 David Reich YR 2017 UL http://biorxiv.org/content/early/2017/03/06/114488.abstract AB Ancient DNA studies have established that European Neolithic populations were descended from Anatolian migrants who received a limited amount of admixture from resident hunter-gatherers. Many open questions remain, however, about the spatial and temporal dynamics of population interactions and admixture during the Neolithic period. Using the highest-resolution genomewide ancient DNA data set assembled to date—a total of 177 samples, 127 newly reported here, from the Neolithic and Chalcolithic of Hungary (6000–2900 BCE, n = 98), Germany (5500–3000 BCE, n = 42), and Spain (5500–2200 BCE, n = 37)—we investigate the population dynamics of Neolithization across Europe. We find that genetic diversity was shaped predominantly by local processes, with varied sources and proportions of hunter-gatherer ancestry among the three regions and through time. Admixture between groups with different ancestry profiles was pervasive and resulted in observable population transformation across almost all cultural transitions. Our results shed new light on the ways that gene flow reshaped European populations throughout the Neolithic period and demonstrate the potential of time-series-based sampling and modeling approaches to elucidate multiple dimensions of historical population interactions.