PT  - JOURNAL ARTICLE
AU  - Garcia, Jadran F.
AU  - Figueroa-Balderas, Rosa
AU  - Comont, Gwenaëlle
AU  - Delmas, Chloé E. L.
AU  - Baumgartner, Kendra
AU  - Cantu, Dario
TI  - Genome analysis of the esca-associated Basidiomycetes <em>Fomitiporia mediterranea</em>, <em>Fomitiporia polymorpha</em>, <em>Inonotus vitis</em>, and <em>Tropicoporus texanus</em> reveals virulence factor repertoires characteristic of white-rot fungi
AID  - 10.1101/2024.06.09.598094
DP  - 2024 Jan 01
TA  - bioRxiv
PG  - 2024.06.09.598094
4099  - http://biorxiv.org/content/early/2024/06/09/2024.06.09.598094.short
4100  - http://biorxiv.org/content/early/2024/06/09/2024.06.09.598094.full
AB  - Some Basidiomycete fungi are important plant pathogens, and certain species have been associated with the grapevine trunk disease esca. We present the genomes of four species associated with esca: Fomitiporia mediterranea, Fomitiporia polymorpha, Tropicoporus texanus, and Inonotus vitis. We generated high-qualityphased genome assemblies using long-read sequencing. The genomic and functional comparisons identified potential virulence factors, suggesting their roles in disease development. Similar to other white-rot fungi known for their ability to degrade lignocellulosic substrates, these four genomes encoded a variety of lignin peroxidases and carbohydrate-active enzymes (CAZymes) such as CBM1, AA9, and AA2. The analysis of gene family expansion and contraction revealed dynamic evolutionary patterns, particularly in genes related to secondary metabolite production, plant cell wall decomposition, and xenobiotic degradation. The availability of these genomes will serve as a reference for further studies of diversity and evolution of virulence factors and their roles in esca symptoms and host resistance.Competing Interest StatementThe authors have declared no competing interest.