RT Journal Article SR Electronic T1 zUMIs JF bioRxiv FD Cold Spring Harbor Laboratory SP 153940 DO 10.1101/153940 A1 Swati Parekh A1 Christoph Ziegenhain A1 Beate Vieth A1 Wolfgang Enard A1 Ines Hellmann YR 2017 UL http://biorxiv.org/content/early/2017/06/22/153940.abstract AB RNA sequencing is increasingly performed with less starting material and at a higher sample throughput, e.g. to analyse single-cell transcriptomes. In this context, unique molecular identifiers (UMIs) are used to reduce amplification noise and sample-specific barcodes are used to track libraries. Here, we present a fast and flexible pipeline to process data from such RNA-seq protocols.Availability: https://github.com/sdparekh/zUMIs