RT Journal Article SR Electronic T1 The Application of Deep Convolutional Neural Networks to Ultrasound for Modelling of Dynamic States within Human Skeletal Muscle JF bioRxiv FD Cold Spring Harbor Laboratory SP 157479 DO 10.1101/157479 A1 Cunningham, Ryan J. A1 Harding, Peter J. A1 Loram, Ian D. YR 2017 UL http://biorxiv.org/content/early/2017/06/29/157479.abstract AB This paper concerns the fully automatic direct in vivo measurement of active and passive dynamic skeletal muscle states using ultrasound imaging. Despite the long standing medical need (myopathies, neuropathies, pain, injury, ageing), currently technology (electromyography, dynamometry, shear wave imaging) provides no general, non-invasive method for online estimation of skeletal intramuscular states. Ultrasound provides a technology in which static and dynamic muscle states can be observed non-invasively, yet current computational image understanding approaches are inadequate. We propose a new approach in which deep learning methods are used for understanding the content of ultrasound images of muscle in terms of its measured state. Ultrasound data synchronized with electromyography of the calf muscles, with measures of joint torque/angle were recorded from 19 healthy participants (6 female, ages: 30 ± 7.7). A segmentation algorithm previously developed by our group was applied to extract a region of interest of the medial gastrocnemius. Then a deep convolutional neural network was trained to predict the measured states (joint angle/torque, electromyography) directly from the segmented images. Results revealed for the first time that active and passive muscle states can be measured directly from standard b-mode ultrasound images, accurately predicting for a held out test participant changes in the joint angle, electromyography, and torque with as little error as 0.022°, 0.0001V, 0.256Nm (root mean square error) respectively.