TY - JOUR T1 - Resources For Interpreting Variants In Precision Genomic Oncology Applications JF - bioRxiv DO - 10.1101/144766 SP - 144766 AU - Hsinyi Tsang AU - Durga Addepalli AU - Sean R. Davis Y1 - 2017/01/01 UR - http://biorxiv.org/content/early/2017/08/04/144766.abstract N2 - Precision genomic oncology–applying high throughput sequencing (HTS) at the point-of-care to inform clinical decisions–is a developing precision medicine paradigm that is seeing increasing adoption. Simultaneously, new developments in targeted agents and immunotherapy, when informed by rich genomic characterization offer potential benefit to a growing subset of patients. Multiple previous studies have commented on methods for identifying both germline and somatic variants. However, interpreting individual variants remains a significant challenge, relying in large part on the integration of observed variants with biological knowledge. A number of data and software resources have been developed to assist in interpreting observed variants, determining their potential clinical actionability, and augmenting them with ancillary information that can inform clinical decisions and even generate new hypotheses for exploration in the laboratory. Here, we review available variant catalogs, variant and functional annotation software and tools, and databases of clinically actionable variants that can be used in an ad hoc approach with research samples or incorporated into a data platform for interpreting and formally reporting clinical results. ER -