RT Journal Article SR Electronic T1 Genomic dissection of bipolar disorder and schizophrenia including 28 subphenotypes JF bioRxiv FD Cold Spring Harbor Laboratory SP 173435 DO 10.1101/173435 A1 Douglas M Ruderfer A1 Stephan Ripke A1 Andrew McQuillin A1 James Boocock A1 Eli A Stahl A1 Jennifer M Whitehead Pavlides A1 Niamh Mullins A1 Alexander W Charney A1 Anil P S Ori A1 Loes M Olde Loohuis A1 Enrico Domenici A1 Arianna Di Florio A1 Sergi Papiol A1 Janos L. Kalman A1 Rolf Adolfsson A1 Ingrid Agartz A1 Esben Agerbo A1 Huda Akil A1 Diego Albani A1 Margot Albus A1 Martin Alda A1 Madeline Alexander A1 Judith Allardyce A1 Ney Alliey-Rodriguez A1 Thomas D Als A1 Farooq Amin A1 Adebayo Anjorin A1 Maria J Arranz A1 Swapnil Awasthi A1 Silviu A Bacanu A1 Judith A Badner A1 Marie Baekvad-Hansen A1 Steven Bakker A1 Gavin Band A1 Jack D Barchas A1 Ines Barroso A1 Nicholas Bass A1 Michael Bauer A1 Bernhard T Baune A1 Martin Begemann A1 Celine Bellenguez A1 Richard A Belliveau, Jr A1 Frank Bellivier A1 Stephan Bender A1 Judit Bene A1 Sarah E Bergen A1 Wade H Berrettini A1 Elizabeth Bevilacqua A1 Joanna M Biernacka A1 Tim B Bigdeli A1 Donald W Black A1 Hannah Blackburn A1 Jenefer M Blackwell A1 Douglas HR Blackwood A1 Carsten Bocker Pedersen A1 Michael Boehnke A1 Marco Boks A1 Anders D Borglum A1 Elvira Bramon A1 Gerome Breen A1 Matthew A Brown A1 Richard Bruggeman A1 Nancy G Buccola A1 Randy L Buckner A1 Monika Budde A1 Brendan Bulik-Sullivan A1 Suzannah J Bumpstead A1 William Bunney A1 Margit Burmeister A1 Joseph D Buxbaum A1 Jonas Bybjerg-Grauholm A1 William Byerley A1 Wiepke Cahn A1 Guiqing Cai A1 Murray J Cairns A1 Dominique Campion A1 Rita M Cantor A1 Vaughan J Carr A1 Noa Carrera A1 Juan P Casas A1 Miquel Casas A1 Stanley V Catts A1 Pablo Cervantes A1 Kimberley D Chambert A1 Raymond CK Chan A1 Eric YH Chen A1 Ronald YL Chen A1 Wei Cheng A1 Eric FC Cheung A1 Siow Ann Chong A1 Toni-Kim Clarke A1 C Robert Cloninger A1 David Cohen A1 Nadine Cohen A1 Jonathan R I Coleman A1 David A Collier A1 Paul Cormican A1 William Coryell A1 Nicholas Craddock A1 David W Craig A1 Benedicto Crespo-Facorro A1 James J Crowley A1 Cristiana Cruceanu A1 David Curtis A1 Piotr M Czerski A1 Anders M Dale A1 Mark J Daly A1 Udo Dannlowski A1 Ariel Darvasi A1 Michael Davidson A1 Kenneth L Davis A1 Christiaan A de Leeuw A1 Franziska Degenhardt A1 Jurgen Del Favero A1 Lynn E DeLisi A1 Panos Deloukas A1 Ditte Demontis A1 J Raymond DePaulo A1 Marta di Forti A1 Dimitris Dikeos A1 Timothy Dinan A1 Srdjan Djurovic A1 Amanda L Dobbyn A1 Peter Donnelly A1 Gary Donohoe A1 Elodie Drapeau A1 Serge Dronov A1 Jubao Duan A1 Frank Dudbridge A1 Audrey Duncanson A1 Howard Edenberg A1 Sarah Edkins A1 Hannelore Ehrenreich A1 Peter Eichhammer A1 Torbjorn Elvsashagen A1 Johan Eriksson A1 Valentina Escott-Price A1 Tonu Esko A1 Laurent Essioux A1 Bruno Etain A1 Chun Chieh Fan A1 Kai-How Farh A1 Martilias S Farrell A1 Matthew Flickinger A1 Tatiana M Foroud A1 Liz Forty A1 Josef Frank A1 Lude Franke A1 Christine Fraser A1 Robert Freedman A1 Colin Freeman A1 Nelson B Freimer A1 Joseph I Friedman A1 Menachem Fromer A1 Mark A Frye A1 Janice M Fullerton A1 Katrin Gade A1 Julie Garnham A1 Helena A Gaspar A1 Pablo V Gejman A1 Giulio Genovese A1 Lyudmila Georgieva A1 Claudia Giambartolomei A1 Eleni Giannoulatou A1 Ina Giegling A1 Michael Gill A1 Matthew Gillman A1 Marianne Giortz Pedersen A1 Paola Giusti-Rodriguez A1 Stephanie Godard A1 Fernando Goes A1 Jacqueline I Goldstein A1 Srihari Gopal A1 Scott D Gordon A1 Katherine Gordon-Smith A1 Jacob Gratten A1 Emma Gray A1 Elaine K Green A1 Melissa J Green A1 Tiffany A Greenwood A1 Maria Grigoroiu-Serbanescu A1 Jakob Grove A1 Weihua Guan A1 Hugh Gurling A1 Jose Guzman Parra A1 Rhian Gwilliam A1 Lieuwe de Haan A1 Jeremy Hall A1 Mei-Hua Hall A1 Christian Hammer A1 Naomi Hammond A1 Marian L Hamshere A1 Mark Hansen A1 Thomas Hansen A1 Vahram Haroutunian A1 Annette M Hartmann A1 Joanna Hauser A1 Martin Hautzinger A1 Urs Heilbronner A1 Garrett Hellenthal A1 Frans A Henskens A1 Stefan Herms A1 Maria Hipolito A1 Joel N Hirschhorn A1 Per Hoffmann A1 Mads V Hollegaard A1 David M Hougaard A1 Hailiang Huang A1 Laura Huckins A1 Christina M Hultman A1 Sarah E Hunt A1 Masashi Ikeda A1 Nakao Iwata A1 Conrad Iyegbe A1 Assen V Jablensky A1 Stephane Jamain A1 Janusz Jankowski A1 Alagurevathi Jayakumar A1 Inge Joa A1 Ian Jones A1 Lisa A Jones A1 Erik G Jonsson A1 Antonio Julia A1 Anders Jureus A1 Anna K Kahler A1 Rene S Kahn A1 Luba Kalaydjieva A1 Radhika Kandaswamy A1 Sena Karachanak-Yankova A1 Juha Karjalainen A1 Robert Karlsson A1 David Kavanagh A1 Matthew C Keller A1 Brian J Kelly A1 John Kelsoe A1 James L Kennedy A1 Andrey Khrunin A1 Yunjung Kim A1 George Kirov A1 Sarah Kittel-Schneider A1 Janis Klovins A1 Jo Knight A1 Sarah V Knott A1 James A Knowles A1 Manolis Kogevinas A1 Bettina Konte A1 Eugenia Kravariti A1 Vaidutis Kucinskas A1 Zita Ausrele Kucinskiene A1 Ralph Kupka A1 Hana Kuzelova-Ptackova A1 Mikael Landen A1 Cordelia Langford A1 Claudine Laurent A1 Jacob Lawrence A1 Stephen Lawrie A1 William B Lawson A1 Markus Leber A1 Marion Leboyer A1 Phil H Lee A1 Jimmy Lee Chee Keong A1 Sophie E Legge A1 Todd Lencz A1 Bernard Lerer A1 Douglas F Levinson A1 Shawn E Levy A1 Cathryn M Lewis A1 Jun Z Li A1 Miaoxin Li A1 Qingqin S Li A1 Tao Li A1 Kung-Yee Liang A1 Jennifer Liddle A1 Jeffrey Lieberman A1 Svetlana Limborska A1 Kuang Lin A1 Don H Linszen A1 Jolanta Lissowska A1 Chunyu Liu A1 Jianjun Liu A1 Jouko Lonnqvist A1 Carmel M Loughland A1 Jan Lubinski A1 Susanne Lucae A1 Milan Macek, Jr A1 Donald J MacIntyre A1 Patrik KE Magnusson A1 Brion S Maher A1 Pamela B Mahon A1 Wolfgang Maier A1 Anil K Malhotra A1 Jacques Mallet A1 Ulrik F Malt A1 Hugh S Markus A1 Sara Marsal A1 Nicholas G Martin A1 Ignacio Mata A1 Christopher G Mathew A1 Manuel Mattheisen A1 Morten Mattingsdal A1 Fermin Mayoral A1 Owen T McCann A1 Robert W McCarley A1 Steven A McCarroll A1 Mark I McCarthy A1 Colm McDonald A1 Susan L McElroy A1 Peter McGuffin A1 Melvin G Mclnnis A1 Andrew M McIntosh A1 James D McKay A1 Francis J McMahon A1 Helena Medeiros A1 Sarah E Medland A1 Sandra Meier A1 Carin J Meijer A1 Bela Melegh A1 Ingrid Melle A1 Fan Meng A1 Raquelle I Mesholam-Gately A1 Andres Metspalu A1 Patricia T Michie A1 Lili Milani A1 Vihra Milanova A1 Philip B Mitchell A1 Younes Mokrab A1 Grant W Montgomery A1 Jennifer L Moran A1 Gunnar Morken A1 Derek W Morris A1 Ole Mors A1 Preben B Mortensen A1 Bryan J Mowry A1 Thomas W Mühleisen A1 Bertram Müller-Myhsok A1 Kieran C Murphy A1 Robin M Murray A1 Richard M Myers A1 Inez Myin-Germeys A1 Benjamin M Neale A1 Mari Nelis A1 Igor Nenadic A1 Deborah A Nertney A1 Gerald Nestadt A1 Kristin K Nicodemus A1 Caroline M Nievergelt A1 Liene Nikitina-Zake A1 Vishwajit Nimgaonkar A1 Laura Nisenbaum A1 Merete Nordentoft A1 Annelie Nordin A1 Markus M Nöthen A1 Evaristus A Nwulia A1 Eadbhard O’Callaghan A1 Claire O’Donovan A1 O’Dushlaine Colm A1 F Anthony O’Neill A1 Ketil J Oedegaard A1 Sang-Yun Oh A1 Ann Olincy A1 Line Olsen A1 Lilijana Oruc A1 Jim Van Os A1 Michael J Owen A1 Sara A Paciga A1 Colin N A Palmer A1 Aarno Palotie A1 Christos Pantelis A1 George N Papadimitriou A1 Elena Parkhomenko A1 Carlos Pato A1 Michele T Pato A1 Tiina Paunio A1 Richard Pearson A1 Psychosis Endophenotypes International Consortium A1 Diana O Perkins A1 Roy H Perlis A1 Amy Perry A1 Tune H Pers A1 Tracey L Petryshen A1 Andrea Pfennig A1 Marco Picchioni A1 Olli Pietilainen A1 Jonathan Pimm A1 Matti Pirinen A1 Robert Plomin A1 Andrew J Pocklington A1 Danielle Posthuma A1 James B Potash A1 Simon C Potter A1 John Powell A1 Alkes Price A1 Ann E Pulver A1 Shaun M Purcell A1 Digby Quested A1 Josep Antoni Ramos-Quiroga A1 Henrik B Rasmussen A1 Anna Rautanen A1 Radhi Ravindrarajah A1 Eline J Regeer A1 Abraham Reichenberg A1 Andreas Reif A1 Mark A Reimers A1 Marta Ribases A1 John P Rice A1 Alexander L Richards A1 Michelle Ricketts A1 Brien P Riley A1 Fabio Rivas A1 Margarita Rivera A1 Joshua L Roffman A1 Guy A Rouleau A1 Panos Roussos A1 Dan Rujescu A1 Veikko Salomaa A1 Cristina Sanchez-Mora A1 Alan R Sanders A1 Stephen J Sawcer A1 Ulrich Schall A1 Alan F Schatzberg A1 William A Scheftner A1 Peter R Schofield A1 Nicholas J Schork A1 Sibylle G Schwab A1 Edward M Scolnick A1 Laura J Scott A1 Rodney J Scott A1 Larry J Seidman A1 Alessandro Serretti A1 Pak C Sham A1 Cynthia Shannon Weickert A1 Tatyana Shehktman A1 Jianxin Shi A1 Paul D Shilling A1 Engilbert Sigurdsson A1 Jeremy M Silverman A1 Kang Sim A1 Claire Slaney A1 Petr Slominsky A1 Olav B Smeland A1 Jordan W Smoller A1 Hon-Cheong So A1 Janet L Sobell A1 Erik Soderman A1 Christine Soholm Hansen A1 Chris C A Spencer A1 Anne T Spijker A1 David St Clair A1 Hreinn Stefansson A1 Kari Stefansson A1 Stacy Steinberg A1 Elisabeth Stogmann A1 Eystein Stordal A1 Amy Strange A1 Richard E Straub A1 John S Strauss A1 Fabian Streit A1 Eric Strengman A1 Jana Strohmaier A1 T Scott Stroup A1 Zhan Su A1 Mythily Subramaniam A1 Jaana Suvisaari A1 Dragan M Svrakic A1 Jin P Szatkiewicz A1 Szabolcs Szelinger A1 Avazeh Tashakkori-Ghanbaria A1 Srinivas Thirumalai A1 Robert C Thompson A1 Thorgeir E Thorgeirsson A1 Draga Toncheva A1 Paul A Tooney A1 Sarah Tosato A1 Timothea Toulopoulou A1 Richard C Trembath A1 Jens Treutlein A1 Vassily Trubetskoy A1 Gustavo Turecki A1 Arne E Vaaler A1 Helmut Vedder A1 Eduard Vieta A1 John Vincent A1 Peter M Visscher A1 Ananth C Viswanathan A1 Damjan Vukcevic A1 John Waddington A1 Matthew Waller A1 Dermot Walsh A1 Muriel Walshe A1 James TR Walters A1 Dai Wang A1 Qiang Wang A1 Weiqing Wang A1 Yunpeng Wang A1 Stanley J Watson A1 Bradley T Webb A1 Thomas W Weickert A1 Daniel R Weinberger A1 Matthias Weisbrod A1 Mark Weiser A1 Thomas Werge A1 Paul Weston A1 Pamela Whittaker A1 Sara Widaa A1 Durk Wiersma A1 Dieter B Wildenauer A1 Nigel M Williams A1 Stephanie Williams A1 Stephanie H Witt A1 Aaron R Wolen A1 Emily HM Wong A1 Nicholas W Wood A1 Brandon K Wormley A1 Wellcome Trust Case-Control Consortium A1 Jing Qin Wu A1 Simon Xi A1 Wei Xu A1 Allan H Young A1 Clement C Zai A1 Peter Zandi A1 Peng Zhang A1 Xuebin Zheng A1 Fritz Zimprich A1 Sebastian Zollner A1 Aiden Corvin A1 Ayman H Fanous A1 Sven Cichon A1 Marcella Rietschel A1 Elliot S Gershon A1 Thomas G Schulze A1 Alfredo B Cuellar-Barboza A1 Andreas J Forstner A1 Peter A Holmans A1 John I Nurnberger A1 Ole A Andreassen A1 S Hong Lee A1 Michael C O’Donovan A1 Patrick F Sullivan A1 Roel A Ophoff A1 Naomi R Wray A1 Pamela Sklar A1 Kenneth S Kendler YR 2017 UL http://biorxiv.org/content/early/2017/08/08/173435.abstract AB Schizophrenia (SCZ) and bipolar disorder (BD) are highly heritable disorders that share a significant proportion of common risk variation. Understanding the genetic factors underlying the specific symptoms of these disorders will be crucial for improving diagnosis, intervention and treatment. In case-control data consisting of 53,555 cases (20,129 BD, 33,426 SCZ) and 54,065 controls, we identified 114 genome-wide significant loci (GWS) when comparing all cases to controls, of which 41 represented novel findings. Two genome-wide significant loci were identified when comparing SCZ to BD and a third was found when directly incorporating functional information. Regional joint association identified a genomic region of overlapping association in BD and SCZ with disease-independent causal variants indicating a fourth region contributing to differences between these disorders. Regional SNP-heritability analyses demonstrated that the estimated heritability of BD based on the SCZ GWS regions was significantly higher than that based on the average genomic region (91 regions, p = 1.2×10−6) while the inverse was not significant (19 regions, p=0.89). Using our BD and SCZ GWAS we calculated polygenic risk scores and identified several significant correlations with: 1) SCZ subphenotypes: negative symptoms (SCZ, p=3.6×10−6) and manic symptoms (BD, p=2×10−5), 2) BD subphenotypes: psychotic features (SCZ p=1.2×10−10, BD p=5.3×10−5) and age of onset (SCZ p=7.9×10−4). Finally, we show that psychotic features in BD has significant SNP-heritability (h2 snp=0.15, SE=0.06), and a significant genetic correlation with SCZ (rg=0.34) in addition there is a significant sign test result between SCZ GWAS and a GWAS of BD cases contrasting those with and without psychotic features (p=0.0038, one-side binomial test). For the first time, we have identified specific loci pointing to a potential role of 4 genes (DARS2, ARFGEF2, DCAKD and GATAD2A) that distinguish between BD and SCZ, providing an opportunity to understand the biology contributing to clinical differences of these disorders. Our results provide the best evidence so far of genomic components distinguishing between BD and SCZ that contribute directly to specific symptom dimensions.