PT  - JOURNAL ARTICLE
AU  - Swamy Rakesh Adapa
AU  - Rachel A. Taylor
AU  - Chengqi Wang
AU  - Richard Thomson-Luque
AU  - Leah R. Johnson
AU  - Rays H.Y. Jiang
TI  - Transmission Expression Signature in Nascent <em>Plasmodium vivax</em> Blood Stage Infection
AID  - 10.1101/175018
DP  - 2017 Jan 01
TA  - bioRxiv
PG  - 175018
4099  - http://biorxiv.org/content/early/2017/08/11/175018.short
4100  - http://biorxiv.org/content/early/2017/08/11/175018.full
AB  - The lack of a continuous in vitro culture system for Plasmodium vivax severely limits our knowledge of pathophysiology of the most widespread malaria parasite. To gain direct understanding of P. vivax human infections, we used Next Generation Sequencing data mining to unravel parasite in vivo expression profiles for P. vivax, and P. falciparum as comparison. We performed cloud and local computing to extract parasite transcriptomes from publicly available raw data of human blood samples. We developed a Poisson Modelling (PM) method to confidently identify parasite derived transcripts in mixed RNAseq signals of infected host tissues. We successfully retrieved and reconstructed parasite transcriptomes from infected patient blood as early as the first blood stage cycle; and the same methodology did not recover any significant signal from controls. Surprisingly, these first generation blood parasites already show strong signature of transmission, which indicates the commitment from asexual-to-sexual stages. Further, we develop mathematical models for P. vivax and P. falciparum to assess the epidemiological impact of possible 7-day early stage transmission and P. vivax complex life cycle. The study uncovers the earliest onset of P. vivax blood pathogenesis and highlights the challenges of P. vivax eradication programs.Author summary We discovered that P. vivax in vivo parasitemia is associated with gametocytogenesis expression signature within the first blood stage cycle, that is, eight days from a mosquito bite. Our results suggest that asexual-to-sexual commitment may happen with first generation merozoite infection. This allows for the possibility of transmission at this early stage, much earlier than for P. falciparum. Our novel mathematical model accounts for multiple unique aspects of P. vivax biology to advance our understanding of expected disease prevalence, and compares the results to those of P. falciparum. We demonstrate that given the presence of asymptotical carriers and the possibility of relapses, earlier parasite transmission is capable of increasing the spread of disease within human populations. In summary, P. vivax gametogenesis has the potential to fast track the transmission cycle, which will drive enhanced propagation of the disease during the transmission season and clinical relapses.