PT  - JOURNAL ARTICLE
AU  - Dasgupta, Sanjoy
AU  - Stevens, Charles F.
AU  - Navlakha, Saket
TI  - A neural algorithm for a fundamental computing problem
AID  - 10.1101/180471
DP  - 2017 Jan 01
TA  - bioRxiv
PG  - 180471
4099  - http://biorxiv.org/content/early/2017/08/25/180471.short
4100  - http://biorxiv.org/content/early/2017/08/25/180471.full
AB  - Similarity search, such as identifying similar images in a database or similar documents on the Web, is a fundamental computing problem faced by many large-scale information retrieval systems. We discovered that the fly’s olfac-tory circuit solves this problem using a novel variant of a traditional computer science algorithm (called locality-sensitive hashing). The fly’s circuit assigns similar neural activity patterns to similar input stimuli (odors), so that behav-iors learned from one odor can be applied when a similar odor is experienced. The fly’s algorithm, however, uses three new computational ingredients that depart from traditional approaches. We show that these ingredients can be translated to improve the performance of similarity search compared to tra-ditional algorithms when evaluated on several benchmark datasets. Overall, this perspective helps illuminate the logic supporting an important sensory function (olfaction), and it provides a conceptually new algorithm for solving a fundamental computational problem.