RT Journal Article
SR Electronic
T1 PrimerServer: a high-throughput primer design and specificity-checking platform
JF bioRxiv
FD Cold Spring Harbor Laboratory
SP 181941
DO 10.1101/181941
A1 Tao Zhu
A1 Chengzhen Liang
A1 Zhigang Meng
A1 Yanyan Li
A1 Yayu Wu
A1 Sandui Guo
A1 Rui Zhang
YR 2017
UL http://biorxiv.org/content/early/2017/08/30/181941.abstract
AB Summary Designing specific primers for multiple sites across the whole genome is still challenging, especially in species with complex genomes. Here we present PrimerServer, a high-throughput primer design and specificity-checking platform with both web and command-line interfaces. This platform efficiently integrates site selection, primer design, specificity checking and data presentation. In our case study, PrimerServer achieved high accuracy and a fast running speed for a large number of sites, suggesting its potential for molecular biology applications such as molecular breeding or medical testing.Availability and Implementation Source code for PrimerServer is available at https://github.com/billzt/PrimerServer. A demo server is freely accessible at https://primerserver.org, with all major browsers supported.Contact zhangrui{at}caas.cn or guosandui{at}caas.cn