RT Journal Article SR Electronic T1 Mutual regulation underlies paralogue functional diversification JF bioRxiv FD Cold Spring Harbor Laboratory SP 427245 DO 10.1101/427245 A1 Daniela Gurska A1 Iris M. Vargas Jentzsch A1 Kristen A. Panfilio YR 2019 UL http://biorxiv.org/content/early/2019/04/15/427245.abstract AB To what extent can ancestral function be deduced from the current roles of duplicated genes? Insect Hox3/zen genes represent an evolutionary hotspot, with single orthologues required either for early specification or late morphogenesis of the extraembryonic tissues. The zen paralogues of the beetle Tribolium castaneum present a unique opportunity to investigate both functions in a single species. We show that despite high sequence similarity the paralogues’ expression dynamics (transcript and protein) and transcriptional targets (RNA-seq after RNAi) are non-redundant. Rather, we find that Tc-Zen2 represses Tc-zen1, producing an evolutionarily novel negative feedback loop that confers a high level of temporal precision to early specification. For late morphogenesis, our molecular profiling of Tc-Zen2 also uncovers a transcriptional delay and partial recovery that underpins the spectrum of morphological phenotypes. Altogether, our molecular dissection reveals that complementary roles and mutual regulation reinforce paralogue retention, implying an evolutionary scenario of iterative subfunctionalization.