RT Journal Article
SR Electronic
T1 Phigaro: high throughput prophage sequence annotation
JF bioRxiv
FD Cold Spring Harbor Laboratory
SP 598243
DO 10.1101/598243
A1 Elizaveta V. Starikova
A1 Polina O. Tikhonova
A1 Nikita A. Prianichnikov
A1 Chris M. Rands
A1 Evgeny M. Zdobnov
A1 Vadim M. Govorun
YR 2019
UL http://biorxiv.org/content/early/2019/04/22/598243.abstract
AB Summary Phigaro is a standalone command-line application that is able to detect prophage regions taking raw genome and metagenome assemblies as an input. It also produces dynamic annotated “prophage genome maps” and marks possible transposon insertion spots inside prophages. It provides putative taxonomic annotations that can distinguish tailed from non-tailed phages. It is applicable for mining prophage regions from large metagenomic datasets.Availability Source code for Phigaro is freely available for download at https://github.com/bobeobibo/phigaro along with test data. The code is written in Python.