RT Journal Article SR Electronic T1 A genetic selection reveals functional metastable structures embedded in a toxin-encoding mRNA JF bioRxiv FD Cold Spring Harbor Laboratory SP 615682 DO 10.1101/615682 A1 Sara Masachis A1 Nicolas J. Tourasse A1 Claire Lays A1 Marion Faucher A1 Sandrine Chabas A1 Isabelle Iost A1 Fabien Darfeuille YR 2019 UL http://biorxiv.org/content/early/2019/04/22/615682.abstract AB Post-transcriptional regulation plays important roles to finely tune gene expression in bacteria. In particular, regulation of type I toxin-antitoxin (TA) systems is achieved through sophisticated mechanisms involving toxin mRNA folding. Here, we set up a genetic approach to decipher the molecular underpinnings behind the regulation of a type I TA in Helicobacter pylori. We used the lethality induced by chromosomal inactivation of the antitoxin to select mutations that suppress toxicity. We found that single point mutations are sufficient to allow cell survival. Mutations located either in the 5’ untranslated region or within the open reading frame of the toxin hamper its translation by stabilizing stem-loop structures that sequester the Shine-Dalgarno sequence. We propose that these short hairpins correspond to metastable structures that are transiently formed during transcription to avoid premature toxin expression. This work uncovers the co-transcriptional inhibition of translation as an additional layer of TA regulation in bacteria.