RT Journal Article
SR Electronic
T1 BIAFLOWS: A collaborative framework to benchmark bioimage analysis workflows
JF bioRxiv
FD Cold Spring Harbor Laboratory
SP 707489
DO 10.1101/707489
A1 Ulysse Rubens
A1 Romain Mormont
A1 Volker Baecker
A1 Gino Michiels
A1 Lassi Paavolainen
A1 Graeme Ball
A1 Devrim Ünay
A1 Benjamin Pavie
A1 Anatole Chessel
A1 Leandro A. Scholz
A1 Martin Maška
A1 Renaud Hoyoux
A1 Rémy Vandaele
A1 Stefan G. Stanciu
A1 Ofra Golani
A1 Natasa Sladoje
A1 Perrine Paul-Gilloteaux
A1 Raphaël Marée
A1 Sébastien Tosi
YR 2019
UL http://biorxiv.org/content/early/2019/07/19/707489.abstract
AB Automated image analysis has become key to extract quantitative information from microscopy images, however the methods involved are now often so complex that they can no longer be unambiguously described using written protocols. We introduce BIAFLOWS, a web based framework to encapsulate, reproducibly deploy, and benchmark automated bioimage analysis workflows. BIAFLOWS helps diffusing and fairly comparing image analysis methods, hence safeguarding research based on their results by enforcing highest quality standards.