RT Journal Article SR Electronic T1 A fungal avirulence factor encoded in a highly plastic genomic region triggers partial resistance to septoria tritici blotch JF bioRxiv FD Cold Spring Harbor Laboratory SP 264226 DO 10.1101/264226 A1 Lukas Meile A1 Daniel Croll A1 Patrick C. Brunner A1 Clémence Plissonneau A1 Fanny E. Hartmann A1 Bruce A. McDonald A1 Andrea Sánchez-Vallet YR 2018 UL http://biorxiv.org/content/early/2018/02/23/264226.abstract AB Cultivar-strain specificity in the wheat-Zymoseptoria tritici pathosystem determines the infection outcome and is controlled by resistance genes on the host side, of which many have been identified. However, on the pathogen side, the molecular determinants of specificity are largely unknown.We used genetic mapping, targeted gene disruption and allele swapping to characterize the recognition of the new avirulence factor Avr3D1. We then combined population genetic and comparative genomic analyses to estimate the evolutionary trajectory of Avr3D1.Avr3D1 is specifically recognized by cultivars harboring the resistance gene Stb7 and triggers a strong defence response without preventing pathogen infection and reproduction. Avr3D1 resides in a cluster of putative effector genes located in a region populated by independent transposable element insertions. The gene is present in all 132 investigated strains and is highly polymorphic, with a total of 30 different protein variants. We demonstrated that certain amino acid mutations in Avr3D1 led to evasion of recognition.These results demonstrate that quantitative resistance and gene-for-gene interactions are not mutually exclusive per se. Location of avirulence genes in highly plastic genomic regions likely facilitates accelerated evolution that enables escape from recognition by resistance proteins.