RT Journal Article SR Electronic T1 3D super-resolution deep-tissue imaging in living mice JF bioRxiv FD Cold Spring Harbor Laboratory SP 790212 DO 10.1101/790212 A1 Velasco, Mary Grace M. A1 Zhang, Mengyang A1 Antonello, Jacopo A1 Yuan, Peng A1 Allgeyer, Edward S. A1 May, Dennis A1 M’Saad, Ons A1 Kidd, Phylicia A1 Barentine, Andrew E. S. A1 Greco, Valentina A1 Grutzendler, Jaime A1 Booth, Martin J. A1 Bewersdorf, Joerg YR 2019 UL http://biorxiv.org/content/early/2019/10/02/790212.abstract AB Stimulated emission depletion (STED) microscopy enables the three-dimensional (3D) visualization of dynamic nanoscale structures in living cells, offering unique insights into their organization. However, 3D-STED imaging deep inside biological tissue is obstructed by optical aberrations and light scattering. We present a STED system that overcomes these challenges. Through the combination of 2-photon excitation, adaptive optics, far-red emitting organic dyes, and a long-working distance water-immersion objective lens, our system achieves aberration-corrected 3D super-resolution imaging, which we demonstrate 164 µm deep in fixed mouse brain tissue and 76 µm deep in the brain of a living mouse.